Software
phenopype: a phenotyping pipline for Python
phenopype is a high throughput phenotyping package for the programming language Python. It aims at supporting biologists in their efforts to extract high dimensional phenotypic data from digital images. phenopype provides high level functions for image processing that can be stacked and executed sequentially to efficiently process single images or large data sets. Users can interactively assemble their own function-stacks that can be customized and stored along with raw data for full reproducibility. Phenopype is designed to provide robust image analysis workflows that can be implemented with little or no Python experience.
Visit www.phenopype.org to get started
phenopype gallery: vignettes for image analysis in ecology and evolution
I use phenopype as a starting point in many of my image analysis workflows:
Visit the gallery at www.phenopype.org/gallery.